Usage question, can my researchers keep using the binder for their work if we cite binder in publication?

Short answer is an emphatic ‘Yes’ given that is exactly the type of activity Binder is meant to encourage.

More thoroughly:
It sounds like you yourself would have say over how the code the researchers are adapting is credited. See here.
Additionally, since it sounds like everyone involved is using Binder to develop, share, and analyze that code and the output, then all parties citing Binder would be greatly appreciated. (The information is here [more directly here at present].)

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