Hi @manics Manics,
I removed the conda environment and created same environment.
This is the command that I used
sudo /usr/share/miniconda2/bin/conda create -n py36 python=3.6 anaconda
And then I had previous working version of pip list. I used the same list and installed all the packages.
I installed all the packages from the previous working pip list. That includes the packages that are installed when I created the environment. Is that OK or I should exclude them?
Permission: This same permission works fine in other environments.
ls -l /usr/share/miniconda2/envs/py36/bin/jupyterhub-singleuser
-rwxr-xr-x 1 root root 124 Jun 1 20:21 /usr/share/miniconda2/envs/py36/bin/jupyterhub-singleuser
Note: Previous admin advised to use jupyterhub-ldapauthenticator==1.1 but if i use this version when I start jupyterhub I am getting this below error. If I use 1.2.2 I am not getting this error and Jhub is starting but getting the above mentioned 500 internal server issue
Error Trace
[W 2021-06-01 23:18:41.821 JupyterHub configurable:168] Config option delete_invalid_users not recognized by LDAPAuthenticator.
[E 2021-06-01 23:18:41.821 JupyterHub app:1958]
Traceback (most recent call last):
File “/usr/share/miniconda2/envs/py36/lib/python3.6/site-packages/jupyterhub/app.py”, line 1955, in launch_instance_async
await self.initialize(argv)
File “/usr/share/miniconda2/envs/py36/lib/python3.6/site-packages/jupyterhub/app.py”, line 1684, in initialize
await self.init_users()
File “/usr/share/miniconda2/envs/py36/lib/python3.6/site-packages/jupyterhub/app.py”, line 1148, in init_users
if self.authenticator.enable_auth_state:
File “/usr/share/miniconda2/envs/py36/lib/python3.6/site-packages/traitlets/traitlets.py”, line 556, in get
return self.get(obj, cls)
File “/usr/share/miniconda2/envs/py36/lib/python3.6/site-packages/traitlets/traitlets.py”, line 535, in get
value = self._validate(obj, dynamic_default())
File “/usr/share/miniconda2/envs/py36/lib/python3.6/site-packages/jupyterhub/app.py”, line 675, in _authenticator_default
return self.authenticator_class(parent=self, db=self.db)
File “/usr/share/miniconda2/envs/py36/lib/python3.6/site-packages/traitlets/config/configurable.py”, line 84, in init
self.config = config
File “/usr/share/miniconda2/envs/py36/lib/python3.6/site-packages/traitlets/traitlets.py”, line 585, in set
self.set(obj, value)
File “/usr/share/miniconda2/envs/py36/lib/python3.6/site-packages/traitlets/traitlets.py”, line 574, in set
obj._notify_trait(self.name, old_value, new_value)
File “/usr/share/miniconda2/envs/py36/lib/python3.6/site-packages/traitlets/traitlets.py”, line 1139, in _notify_trait
type=‘change’,
File “/usr/share/miniconda2/envs/py36/lib/python3.6/site-packages/traitlets/traitlets.py”, line 1176, in notify_change
c(change)
File “/usr/share/miniconda2/envs/py36/lib/python3.6/site-packages/traitlets/traitlets.py”, line 819, in compatible_observer
return func(self, change)
File “/usr/share/miniconda2/envs/py36/lib/python3.6/site-packages/traitlets/config/configurable.py”, line 186, in _config_changed
self._load_config(change.new, traits=traits, section_names=section_names)
File “/usr/share/miniconda2/envs/py36/lib/python3.6/site-packages/traitlets/config/configurable.py”, line 153, in _load_config
setattr(self, name, deepcopy(config_value))
File “/usr/share/miniconda2/envs/py36/lib/python3.6/site-packages/traitlets/traitlets.py”, line 585, in set
self.set(obj, value)
File “/usr/share/miniconda2/envs/py36/lib/python3.6/site-packages/traitlets/traitlets.py”, line 559, in set
new_value = self._validate(obj, value)
File “/usr/share/miniconda2/envs/py36/lib/python3.6/site-packages/traitlets/traitlets.py”, line 591, in _validate
value = self.validate(obj, value)
File “/usr/share/miniconda2/envs/py36/lib/python3.6/site-packages/traitlets/traitlets.py”, line 2054, in validate
self.error(obj, value)
File “/usr/share/miniconda2/envs/py36/lib/python3.6/site-packages/traitlets/traitlets.py”, line 625, in error
raise TraitError(e)
traitlets.traitlets.TraitError: The ‘bind_dn_template’ trait of a LDAPAuthenticator instance must be a unicode string, but a value of [‘string value’] <class ‘list’> was specified.
Attaching my current pip list
absl-py 0.11.0
alabaster 0.7.12
alembic 1.0.7
amply 0.1.4
anaconda-client 1.7.2
anaconda-project 0.10.0
anyio 2.2.0
appdirs 1.4.4
argh 0.26.2
argon2-cffi 20.1.0
arviz 0.10.0
ASLPAw 2.0.0
asn1crypto 0.24.0
astor 0.8.1
astroid 2.1.0
astropy 3.1
astunparse 1.6.3
async-generator 1.10
atomicwrites 1.2.1
attrs 21.2.0
autopep8 1.5.4
Babel 2.6.0
backcall 0.1.0
backports.os 0.1.1
backports.shutil-get-terminal-size 1.0.0
beautifulsoup4 4.6.3
bimlpa 0.1.2
bitarray 0.8.3
bkcharts 0.2
black 19.10b0
blaze 0.10.1
bleach 3.2.1
blis 0.4.1
bokeh 2.3.0
boto 2.49.0
boto3 1.14.17
botocore 1.17.17
Bottleneck 1.2.1
Brotli 1.0.9
brotlipy 0.7.0
bson 0.5.8
CacheControl 0.12.6
cached-property 1.5.2
cachetools 4.2.0
cachy 0.3.0
catalogue 1.0.0
catboost 0.13.1
cdlib 0.2.0
certifi 2018.11.29
cffi 1.11.5
cftime 1.3.0
chardet 3.0.4
chinese-whispers 0.7.4
cleo 0.8.1
Click 7.0
clikit 0.6.2
cloudera-director-python-client 6.3.0
cloudpickle 1.6.0
clyent 1.2.2
colorama 0.4.1
colorcet 2.0.6
conda 4.3.16
conda-build 2.1.5
conda-pack 0.6.0
contextlib2 0.5.5
contextvars 2.4
count-dict 1.0.2
crashtest 0.3.1
cryptography 2.4.2
cursor 1.3.4
cvae 0.0.3
cycler 0.10.0
cymem 2.0.3
Cython 0.29.2
cytoolz 0.9.0.1
dash 0.39.0
dash-core-components 0.44.0
dash-cytoscape 0.1.1
dash-html-components 0.14.0
dash-renderer 0.20.0
dash-table 3.6.0
dash-table-experiments 0.6.0
dask 2.30.0
dask-glm 0.2.0
dask-lightgbm 0.1.0
dask-ml 1.7.0
dask-xgboost 0.1.11
dataclasses 0.7
datashader 0.12.1
datashape 0.5.2
decorator 4.3.0
defusedxml 0.5.0
demon 2.0.5
dgl 0.6.1
diff-match-patch 20200713
distlib 0.3.1
distributed 2.30.1
docopt 0.6.2
docutils 0.14
dynetx 0.2.4
entrypoints 0.3
enum34 1.1.6
et-xmlfile 1.0.1
eva-lcd 0.1.0
factor-analyzer 0.3.1
fastai 2.0.7
fastcache 1.0.2
fastcore 1.0.0
fastprogress 1.0.0
filelock 3.0.10
flake8 3.9.0
Flask 1.0.2
Flask-Compress 1.4.0
Flask-Cors 3.0.9
flatbuffers 1.12
fsspec 0.8.4
funcy 1.14
future 0.18.2
fuzzywuzzy 0.17.0
gast 0.3.3
gensim 3.8.3
gevent 1.4.0
glob2 0.6
gmpy2 2.0.8
google-auth 1.23.0
google-auth-oauthlib 0.4.2
google-pasta 0.2.0
graphviz 0.14.1
greenlet 0.4.15
grpcio 1.32.0
gssapi 1.6.1
h5py 2.10.0
HeapDict 1.0.0
holoviews 1.14.2
html5lib 1.0.1
icc-rt 2020.0.133
idna 2.8
imageio 2.4.1
imagesize 1.1.0
imbalanced-learn 0.7.0
immutables 0.14
implicit 0.4.2
importlib-metadata 1.7.0
importlib-resources 3.3.0
impyla 0.16.2
iniconfig 1.1.1
install 1.3.3
intel-openmp 2020.0.133
interpret 0.1.8
intervaltree 3.1.0
ipykernel 5.1.1
ipython 7.5.0
ipython-genutils 0.2.0
ipywidgets 7.4.2
isort 4.3.4
itsdangerous 1.1.0
JayDeBeApi 1.2.3
jdcal 1.4
jedi 0.13.2
jeepney 0.6.0
jenkspy 0.1.5
Jinja2 2.11.2
jmespath 0.10.0
joblib 0.13.2
JPype1 1.2.1
json5 0.9.5
jsonschema 2.6.0
jupyter 1.0.0
jupyter-client 5.2.4
jupyter-console 6.0.0
jupyter-contrib-core 0.3.3
jupyter-contrib-nbextensions 0.5.1
jupyter-core 4.4.0
jupyter-highlight-selected-word 0.2.0
jupyter-latex-envs 1.4.6
jupyter-nbextensions-configurator 0.4.1
jupyter-packaging 0.7.12
jupyter-server 0.0.5
jupyterhub 0.9.4
jupyterhub-ldapauthenticator 1.1
jupyterlab 0.35.3
jupyterlab-pygments 0.1.2
jupyterlab-server 0.2.0
jupyterlab-widgets 1.0.0
kafka-python 1.4.6
karateclub 1.0.24
Keras-Applications 1.0.8
keras-nightly 2.5.0.dev2021032900
Keras-Preprocessing 1.1.2
keyring 21.5.0
kiwisolver 1.0.1
koalas 1.3.0
lazy-object-proxy 1.3.1
ldap3 2.5.2
leidenalg 0.8.4
libarchive-c 2.9
Library 0.0.0
lief 0.9.0
lightgbm 2.3.1
lime 0.1.1.34
llvmlite 0.36.0
locket 0.2.0
lockfile 0.12.2
lxml 4.2.5
Mako 1.0.7
Markdown 3.3.3
markov-clustering 0.0.6.dev0
MarkupSafe 1.1.0
matplotlib 3.0.2
mccabe 0.6.1
mecab-python3 0.996.2
mistune 0.8.4
mkl 2019.0
mkl-fft 1.0.6
mkl-random 1.1.1
mkl-service 2.3.0
mlens 0.2.3
mock 4.0.3
more-itertools 4.3.0
mpmath 1.1.0
msgpack 1.0.0
multipledispatch 0.6.0
multivalued-dict 1.7.1
murmurhash 1.0.2
mypy-extensions 0.4.3
nbclassic 0.2.6
nbclient 0.5.3
nbconvert 5.5.0
nbformat 4.4.0
neo4j 4.2.1
neo4j-driver 1.6.3
neobolt 1.7.13
neomodel 3.3.1
neotime 1.7.4
nest-asyncio 1.5.1
netCDF4 1.5.4
networkx 2.5.1
nf1 0.0.3
nltk 3.4
nose 1.3.7
notebook 5.7.8
numba 0.53.1
numexpr 2.6.8
numpy 1.19.4
numpydoc 0.8.0
oauthlib 3.1.0
odo 0.5.0
olefile 0.46
omega-index-py3 0.3
openpyxl 2.5.12
opt-einsum 3.3.0
packaging 20.7
pamela 1.0.0
pandas 1.1.0
pandocfilters 1.4.2
panel 0.11.1
param 1.10.1
parso 0.8.0
partd 1.1.0
pastel 0.2.1
path 15.1.2
path.py 11.5.0
pathlib2 2.3.3
pathspec 0.7.0
pathtools 0.1.2
patsy 0.5.1
pep8 1.7.1
pexpect 4.8.0
pickleshare 0.7.5
Pillow 8.0.1
pip 21.1.1
pipdeptree 1.0.0
pkginfo 1.4.2
plac 1.1.3
plotly 3.10.0
pluggy 0.12.0
ply 3.11
poetry-core 1.0.0
pooch 1.3.0
pquality 0.0.7
preshed 3.0.2
prometheus-client 0.5.0
prompt-toolkit 2.0.7
protobuf 3.14.0
psutil 5.6.2
ptyprocess 0.6.0
PuLP 2.4
py 1.7.0
py2neo 4.3.0
py4j 0.10.8.1
pyarrow 3.0.0
pyasn1 0.4.8
pyasn1-modules 0.2.8
pycodestyle 2.6.0
pycosat 0.6.3
pycparser 2.19
pycrypto 2.6.1
pyct 0.4.8
pycurl 7.43.0.6
pydocstyle 6.1.1
pyflakes 2.0.0
Pygments 2.3.1
PyGSP 0.5.1
PyHive 0.6.3
pyhs2 0.6.0
pyLDAvis 2.1.2
pylev 1.3.0
pylint 2.2.2
pyls-black 0.4.6
pyls-spyder 0.3.2
pynndescent 0.5.2
pyodbc 4.0.25
pyOpenSSL 18.0.0
pyparsing 2.3.0
PyQt5 5.9.2
pyrsistent 0.17.3
PyScaffold 3.0.3
PySocks 1.6.8
pystan 2.18.0.0
pytest 4.6.2
pytest-arraydiff 0.3
pytest-astropy 0.5.0
pytest-doctestplus 0.2.0
pytest-openfiles 0.3.1
pytest-remotedata 0.3.1
pytest-runner 5.1
python-dateutil 2.7.5
python-editor 1.0.4
python-igraph 0.9.1
python-jsonrpc-server 0.4.0
python-language-server 0.36.2
python-Levenshtein 0.12.0
python-louvain 0.14
python-oauth2 1.1.0
pytz 2021.1
pyviz-comms 2.0.1
PyWavelets 1.1.1
pyxdg 0.27
PyYAML 5.3.1
pyzmq 17.1.2
QDarkStyle 2.8.1
QtAwesome 0.5.3
qtconsole 4.4.3
QtPy 1.5.2
regex 2021.4.4
requests 2.24.0
requests-oauthlib 1.3.0
requests-toolbelt 0.9.1
retrying 1.3.3
rope 0.11.0
rsa 4.6
Rtree 0.9.7
ruamel-yaml-conda 0.15.100
ruamel.yaml 0.15.46
ruamel.yaml.clib 0.2.2
s3transfer 0.3.3
SALib 1.3.7
sasl 0.2.1
scikeras 0.2.1
scikit-image 0.17.2
scikit-learn 0.23.2
scikit-optimize 0.5.2
scikit-plot 0.3.7
scipy 1.4.1
scorch 0.0.19
seaborn 0.10.0
SecretStorage 3.3.0
Send2Trash 1.5.0
setuptools 54.2.0
shap 0.28.5
shellescape 3.8.1
shellingham 1.3.2
shuffle-graph 1.1.1
simplegeneric 0.8.1
singledispatch 3.4.0.3
sip 4.19.8
six 1.15.0
skope-rules 1.0.0
slicer 0.0.7
smart-open 2.1.0
sniffio 1.2.0
snowballstemmer 1.2.1
sortedcollections 1.0.1
sortedcontainers 2.1.0
soupsieve 2.2.1
spacy 2.3.0
Sphinx 1.8.2
sphinxcontrib-applehelp 1.0.2
sphinxcontrib-devhelp 1.0.2
sphinxcontrib-htmlhelp 1.0.3
sphinxcontrib-jsmath 1.0.1
sphinxcontrib-qthelp 1.0.3
sphinxcontrib-serializinghtml 1.1.4
sphinxcontrib-websupport 1.1.0
spyder 3.3.2
spyder-kernels 0.3.0
SQLAlchemy 1.3.0
srsly 1.0.2
statsmodels 0.10.0rc2
stellargraph 1.2.1
sympy 1.3
tables 3.4.4
tbb 2021.2.0
tbb4py 2021.2.0
tblib 1.7.0
tensorboard 2.4.0
tensorboard-data-server 0.6.1
tensorboard-plugin-wit 1.7.0
tensorflow 2.4.0
tensorflow-estimator 2.4.0
termcolor 1.1.0
terminado 0.8.1
testpath 0.4.2
textdistance 4.2.1
texttable 1.6.3
thinc 7.4.1
threadpoolctl 2.1.0
three-merge 0.1.1
thrift 0.13.0
thrift-sasl 0.4.2
thriftpy2 0.4.11
tifffile 2020.9.3
toml 0.10.2
tomlkit 0.7.0
toolz 0.10.0
torch 1.6.0
torchvision 0.7.0
tornado 5.0.2
tqdm 4.47.0
traitlets 4.3.2
typed-ast 1.1.0
typing-extensions 3.7.4.3
ujson 4.0.2
umap-learn 0.5.1
unicodecsv 0.14.1
urllib3 1.24.3
varclushi 0.1.0
virtualenv 20.2.1
virtualenv-clone 0.5.4
wasabi 0.7.0
watchdog 1.0.2
wcwidth 0.1.7
webencodings 0.5.1
Werkzeug 1.0.1
wheel 0.36.2
widgetsnbextension 3.4.2
wrapt 1.12.1
wurlitzer 1.0.2
xarray 0.16.1
xgboost 0.82
xlrd 1.2.0
XlsxWriter 1.1.2
xlwt 1.3.0
yapf 0.31.0
zict 0.1.3
zipp 0.5.1
zope.event 4.5.0
zope.interface 5.3.0